{
  "_id": "6a1021c9acfb0bcc41c8c578",
  "Package": "MLMOI",
  "Type": "Package",
  "Title": "Estimating Frequencies, Prevalence and Multiplicity of Infection",
  "Version": "0.1.2",
  "Authors@R": "c(person(\"Meraj\", \"Hashemi\", role = c(\"cre\", \"aut\", \"com\"), email = \"meraj.hashemi.esh@gmail.com\"),\nperson(\"Kristan\", \"Schneider\", role = c(\"aut\", \"ths\"), email = \"kristan.schneider@hs-mittweida.de\"))",
  "Maintainer": "Meraj Hashemi <meraj.hashemi.esh@gmail.com>",
  "Description": "The implemented methods reach out to scientists that seek\nto estimate multiplicity of infection (MOI) and lineage\n(allele) frequencies and prevalences at molecular markers using\nthe maximum-likelihood method described in Schneider (2018)\n<doi:10.1371/journal.pone.0194148>, and Schneider and Escalante\n(2014) <doi:10.1371/journal.pone.0097899>. Users can import\ndata from Excel files in various formats, and perform\nmaximum-likelihood estimation on the imported data by the\npackage's moimle() function.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.2.3",
  "VignetteBuilder": "knitr",
  "RdMacros": "Rdpack",
  "Config/pak/sysreqs": "libgmp3-dev libicu-dev libmpfr-dev",
  "Repository": "https://mhashemihsmw.r-universe.dev",
  "Date/Publication": "2023-11-27 20:38:59 UTC",
  "RemoteUrl": "https://github.com/mhashemihsmw/mlmoi",
  "RemoteRef": "HEAD",
  "RemoteSha": "bf3957cfaf0fbceb4204e5c61b421da681176bc4",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-14 05:13:17 UTC",
    "User": "root"
  },
  "Author": "Meraj Hashemi [cre, aut, com],\nKristan Schneider [aut, ths]",
  "MD5sum": "03ae3c80777c170f2b32f53d5364e98a",
  "_user": "mhashemihsmw",
  "_type": "src",
  "_file": "MLMOI_0.1.2.tar.gz",
  "_fileid": "3527c8bde0d74b0516dc1c94da9b27889e500c01bad3f5cece1612fd8564d022",
  "_filesize": 2455737,
  "_sha256": "3527c8bde0d74b0516dc1c94da9b27889e500c01bad3f5cece1612fd8564d022",
  "_created": "2026-05-14T05:13:17.000Z",
  "_published": "2026-05-22T09:28:41.016Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77352822217,
      "time": 128,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6987648768"
    },
    {
      "job": 77352822929,
      "time": 128,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6987648675"
    },
    {
      "job": 77352822448,
      "time": 136,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6987841662"
    },
    {
      "job": 77352822750,
      "time": 163,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6987854996"
    },
    {
      "job": 77352821976,
      "time": 176,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6987625228"
    },
    {
      "job": 77352821789,
      "time": 94,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7157270151"
    },
    {
      "job": 77352822585,
      "time": 75,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6987639087"
    },
    {
      "job": 77352822995,
      "time": 83,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6987640496"
    },
    {
      "job": 77352822693,
      "time": 80,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6987639678"
    }
  ],
  "_buildurl": "https://github.com/r-universe/mhashemihsmw/actions/runs/25784646188",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/mhashemihsmw/mlmoi",
  "_commit": {
    "id": "bf3957cfaf0fbceb4204e5c61b421da681176bc4",
    "author": "Meraj Hashemi <47851811+mhashemihsmw@users.noreply.github.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Create README.md",
    "time": 1701117539
  },
  "_maintainer": {
    "name": "Meraj Hashemi",
    "email": "meraj.hashemi.esh@gmail.com",
    "login": "mhashemihsmw",
    "linkedin": "in/meraj-hashemi",
    "uuid": 47851811
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.3.0",
      "role": "Depends"
    },
    {
      "package": "openxlsx",
      "version": ">= 4.2.5.2",
      "role": "Imports"
    },
    {
      "package": "Rdpack",
      "version": ">= 2.6",
      "role": "Imports"
    },
    {
      "package": "Rmpfr",
      "version": ">= 0.9-3",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "mhashemihsmw",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "data",
    "data-visualization",
    "dataanalysis",
    "datapreprocessing",
    "datawrangling",
    "statistical-models"
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "mhashemihsmw",
      "count": 10,
      "uuid": 47851811
    }
  ],
  "_userbio": {
    "uuid": 47851811,
    "type": "user",
    "name": "Meraj Hashemi",
    "description": "I'm a data scientist specialized in statistical modeling and machine learning"
  },
  "_downloads": {
    "count": 164,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/MLMOI"
  },
  "_devurl": "https://github.com/mhashemihsmw/mlmoi",
  "_searchresults": 2,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/MLMOI.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/mhashemihsmw/mlmoi",
  "_realowner": "mhashemihsmw",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.1",
      "date": "2020-01-10"
    },
    {
      "version": "0.1.2",
      "date": "2023-12-21"
    }
  ],
  "_exports": [
    "moimerge",
    "moimle",
    "moimport"
  ],
  "_help": [
    {
      "page": "MLMOI",
      "title": "MLMOI: An R Package to preprocess molecular data and derive prevalences, frequencies and multiplicity of infection (MOI)",
      "topics": [
        "MLMOI"
      ]
    },
    {
      "page": "moimerge",
      "title": "Merges two molecular datasets.",
      "topics": [
        "moimerge"
      ]
    },
    {
      "page": "moimle",
      "title": "Estimates prevalences, frequency spectra and MOI parameter.",
      "topics": [
        "moimle"
      ]
    },
    {
      "page": "moimport",
      "title": "Imports molecular data in various formats and transforms them into a standard format.",
      "topics": [
        "moimport"
      ]
    }
  ],
  "_readme": "https://github.com/mhashemihsmw/mlmoi/raw/HEAD/README.md",
  "_rundeps": [
    "gmp",
    "openxlsx",
    "rbibutils",
    "Rcpp",
    "Rdpack",
    "Rmpfr",
    "stringi",
    "zip"
  ],
  "_vignettes": [
    {
      "source": "moimport-arguments.Rmd",
      "filename": "moimport-arguments.html",
      "title": "Arguments of Import Function - moimport",
      "engine": "knitr::rmarkdown",
      "headings": [
        "molecular & coding",
        "Different values of arguments"
      ],
      "created": "2019-02-21 14:22:32",
      "modified": "2023-11-27 20:26:28",
      "commits": 2
    },
    {
      "source": "dataimportcheck-list.Rmd",
      "filename": "dataimportcheck-list.html",
      "title": "Data Import Check-list",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Before using the function moimport, users need to check the dataset to see if it meets the following requirements:"
      ],
      "created": "2019-02-21 14:22:32",
      "modified": "2023-11-27 20:26:28",
      "commits": 2
    },
    {
      "source": "examples.Rmd",
      "filename": "examples.html",
      "title": "Examples",
      "engine": "knitr::rmarkdown",
      "headings": [
        "moimport(file,...)",
        "moimerge(file1, file2,...)",
        "moimle(file,...)"
      ],
      "created": "2019-02-21 14:22:32",
      "modified": "2023-11-27 20:26:28",
      "commits": 3
    },
    {
      "source": "StandardAmbiguityCodes.Rmd",
      "filename": "StandardAmbiguityCodes.html",
      "title": "Standard Ambiguity Codes",
      "engine": "knitr::rmarkdown",
      "headings": [
        "SNPs",
        "Amino Acids and Codons"
      ],
      "created": "2019-02-21 15:56:23",
      "modified": "2023-11-27 20:26:28",
      "commits": 2
    }
  ],
  "_score": 4.301029995663981,
  "_indexed": true,
  "_nocasepkg": "mlmoi",
  "_universes": [
    "mhashemihsmw"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.2",
      "date": "2026-05-14T05:15:23.000Z",
      "distro": "noble",
      "commit": "bf3957cfaf0fbceb4204e5c61b421da681176bc4",
      "fileid": "238e997c2f0020aa55dd6cf25d695a22ead770181041af45fafe3276c841b6e7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mhashemihsmw/actions/runs/25784646188"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.2",
      "date": "2026-05-14T05:15:22.000Z",
      "distro": "noble",
      "commit": "bf3957cfaf0fbceb4204e5c61b421da681176bc4",
      "fileid": "4c19a68b087fe705d77d64b7603fce13ebb157a4a2508458ab341289b8e75c79",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mhashemihsmw/actions/runs/25784646188"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.2",
      "date": "2026-05-14T05:31:50.000Z",
      "commit": "bf3957cfaf0fbceb4204e5c61b421da681176bc4",
      "fileid": "5c38139b07f8fe564e15fd3a0758142960d34a64c2ae2952bd72c0153443641a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mhashemihsmw/actions/runs/25784646188"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.2",
      "date": "2026-05-14T05:32:59.000Z",
      "commit": "bf3957cfaf0fbceb4204e5c61b421da681176bc4",
      "fileid": "00abd6459d30b2496f66fd664576f2b1d66036c8b591527f283d008d74cf3a4d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mhashemihsmw/actions/runs/25784646188"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.2",
      "date": "2026-05-14T05:14:27.000Z",
      "commit": "bf3957cfaf0fbceb4204e5c61b421da681176bc4",
      "fileid": "8e3922ea5b9a8ddaeb1b79509e94a9add48580bd770b3164a378fdbad4da2933",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mhashemihsmw/actions/runs/25784646188"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.2",
      "date": "2026-05-14T05:14:34.000Z",
      "commit": "bf3957cfaf0fbceb4204e5c61b421da681176bc4",
      "fileid": "2da8df0ef054ea0fa8f52a738bd8f1ca22de081eb0aea6207699b83581f9d588",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mhashemihsmw/actions/runs/25784646188"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1.2",
      "date": "2026-05-14T05:14:25.000Z",
      "commit": "bf3957cfaf0fbceb4204e5c61b421da681176bc4",
      "fileid": "9887708c859e026f9fe07cf154f73e35e115c478a23f34f081b2ce4c23c5db31",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mhashemihsmw/actions/runs/25784646188"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.2",
      "date": "2026-05-22T09:28:18.000Z",
      "commit": "bf3957cfaf0fbceb4204e5c61b421da681176bc4",
      "fileid": "dcf7ae7dfe65bf2f38de620f5214f33438a08544e90a199b358a58d8b61e00c0",
      "status": "success",
      "buildurl": "https://github.com/r-universe/mhashemihsmw/actions/runs/25784646188"
    }
  ]
}