Package: MLMOI 0.1.2

MLMOI: Estimating Frequencies, Prevalence and Multiplicity of Infection

The implemented methods reach out to scientists that seek to estimate multiplicity of infection (MOI) and lineage (allele) frequencies and prevalences at molecular markers using the maximum-likelihood method described in Schneider (2018) <doi:10.1371/journal.pone.0194148>, and Schneider and Escalante (2014) <doi:10.1371/journal.pone.0097899>. Users can import data from Excel files in various formats, and perform maximum-likelihood estimation on the imported data by the package's moimle() function.

Authors:Meraj Hashemi [cre, aut, com], Kristan Schneider [aut, ths]

MLMOI_0.1.2.tar.gz
MLMOI_0.1.2.zip(r-4.5)MLMOI_0.1.2.zip(r-4.4)MLMOI_0.1.2.zip(r-4.3)
MLMOI_0.1.2.tgz(r-4.5-any)MLMOI_0.1.2.tgz(r-4.4-any)MLMOI_0.1.2.tgz(r-4.3-any)
MLMOI_0.1.2.tar.gz(r-4.5-noble)MLMOI_0.1.2.tar.gz(r-4.4-noble)
MLMOI_0.1.2.tgz(r-4.4-emscripten)MLMOI_0.1.2.tgz(r-4.3-emscripten)
MLMOI.pdf |MLMOI.html✨
MLMOI/json (API)

# Install 'MLMOI' in R:
install.packages('MLMOI', repos = c('https://mhashemihsmw.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mhashemihsmw/mlmoi/issues

On CRAN:

Conda:

datadata-visualizationdataanalysisdatapreprocessingdatawranglingstatistical-models

4.30 score 2 scripts 134 downloads 3 exports 8 dependencies

Last updated 1 years agofrom:bf3957cfaf. Checks:8 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 17 2025
R-4.5-winOKFeb 17 2025
R-4.5-macOKFeb 17 2025
R-4.5-linuxOKFeb 17 2025
R-4.4-winOKFeb 17 2025
R-4.4-macOKFeb 17 2025
R-4.3-winOKFeb 17 2025
R-4.3-macOKFeb 17 2025

Exports:moimergemoimlemoimport

Dependencies:gmpopenxlsxrbibutilsRcppRdpackRmpfrstringizip

Arguments of Import Function - moimport

Rendered frommoimport-arguments.Rmdusingknitr::rmarkdownon Feb 17 2025.

Last update: 2023-11-27
Started: 2019-02-21

Data Import Check-list

Rendered fromdataimportcheck-list.Rmdusingknitr::rmarkdownon Feb 17 2025.

Last update: 2023-11-27
Started: 2019-02-21

Examples

Rendered fromexamples.Rmdusingknitr::rmarkdownon Feb 17 2025.

Last update: 2023-11-27
Started: 2019-02-21

Standard Ambiguity Codes

Rendered fromStandardAmbiguityCodes.Rmdusingknitr::rmarkdownon Feb 17 2025.

Last update: 2023-11-27
Started: 2019-02-21