Package: MLMOI 0.1.2

MLMOI: Estimating Frequencies, Prevalence and Multiplicity of Infection

The implemented methods reach out to scientists that seek to estimate multiplicity of infection (MOI) and lineage (allele) frequencies and prevalences at molecular markers using the maximum-likelihood method described in Schneider (2018) <doi:10.1371/journal.pone.0194148>, and Schneider and Escalante (2014) <doi:10.1371/journal.pone.0097899>. Users can import data from Excel files in various formats, and perform maximum-likelihood estimation on the imported data by the package's moimle() function.

Authors:Meraj Hashemi [cre, aut, com], Kristan Schneider [aut, ths]

MLMOI_0.1.2.tar.gz
MLMOI_0.1.2.zip(r-4.7-any)MLMOI_0.1.2.zip(r-4.6-any)MLMOI_0.1.2.zip(r-4.5-any)
MLMOI_0.1.2.tgz(r-4.6-any)MLMOI_0.1.2.tgz(r-4.5-any)
MLMOI_0.1.2.tar.gz(r-4.7-any)MLMOI_0.1.2.tar.gz(r-4.6-any)
MLMOI_0.1.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
MLMOI/json (API)

# Install 'MLMOI' in R:
install.packages('MLMOI', repos = c('https://mhashemihsmw.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mhashemihsmw/mlmoi/issues

On CRAN:

Conda:

datadata-visualizationdataanalysisdatapreprocessingdatawranglingstatistical-models

4.30 score 3 scripts 224 downloads 3 exports 9 dependencies

Last updated from:bf3957cfaf. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK121
source / vignettesOK154
linux-releaseOK110
macos-releaseOK121
macos-oldrelOK121
windows-develOK72
windows-releaseOK86
windows-oldrelOK70
wasm-releaseOK102

Exports:moimergemoimlemoimport

Dependencies:cligmpopenxlsxrbibutilsRcppRdpackRmpfrstringizip

Arguments of Import Function - moimport
molecular & coding | Different values of arguments
Rendered frommoimport-arguments.Rmdusingknitr::rmarkdown

Last update: 2023-11-27
Started: 2019-02-21

Data Import Check-list
Before using the function moimport, users need to check the dataset to see if it meets the following requirements:
Rendered fromdataimportcheck-list.Rmdusingknitr::rmarkdown

Last update: 2023-11-27
Started: 2019-02-21

Examples
moimport(file,...) | moimerge(file1, file2,...) | moimle(file,...)
Rendered fromexamples.Rmdusingknitr::rmarkdown

Last update: 2023-11-27
Started: 2019-02-21

Standard Ambiguity Codes
SNPs | Amino Acids and Codons
Rendered fromStandardAmbiguityCodes.Rmdusingknitr::rmarkdown

Last update: 2023-11-27
Started: 2019-02-21